PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g08590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 355aa    MW: 40627.9 Da    PI: 9.9441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g08590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05119142123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y C  Cg++F +++ L++H +  H
  CA01g08590 119 YICRVCGRRFYSNEKLVNHFKQiH 142
                 89*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.28E-5118144No hitNo description
Gene3DG3DSA:3.30.160.601.6E-4118143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.926119147IPR007087Zinc finger, C2H2
SMARTSM003550.0048119142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
CDDcd061671.60E-13191271No hitNo description
PfamPF019366.4E-9193271IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.3E-9204278IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMKYVKVGAF IHAIHSYNRF CHFESKPHLG FGSLDSQVRA SVGIFWDLDN KPPKSFPPYD  60
AATKLKKAAS EFGVVRFTVA YANRQAFSYV PPLVREQRKE RKALTLLEKS GVVKVVEPYI  120
CRVCGRRFYS NEKLVNHFKQ IHEREHKKRL SKIESARGKM RVKLVAKYAM KMDKYKGAVR  180
DVLIPKAGYV LADELKRAGF WVRTVENKPQ AADIALRNHL VDVMDKRMVD HVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD SNDGALKRIA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EVEKKLYYSE VESDDSDGFF SGEEDVGASV LKENAGAWWK LDSHS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550101.10.0PREDICTED: uncharacterized protein LOC107850196
TrEMBLM0ZKC80.0M0ZKC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000026010.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-130C2H2 family protein